chr5:132408882:T>C Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr5:131,744,574-131,744,574 View the variant detail on this assembly version. |
| hg38 | chr5:132,408,882-132,408,882 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.342 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.125 | Fibrinogen Adverse Event | Novel loci, including those related to Crohn disease, psoriasis, and inflammatio... | GWASCAT | 20031577 | Detail |
| 0.122 | Fibrinogen Adverse Event | [A genome-wide survey of the human genome identifies novel loci related to commo... | GAD | 20031577 | Detail |
| 0.002 | Fibrinogen Adverse Event | [A genome-wide survey of the human genome identifies novel loci related to commo... | GAD | 20031577 | Detail |
| 0.005 | Fibrinogen Adverse Event | [Novel loci, including those related to Crohn disease, psoriasis, and inflammati... | GAD | 20031577 | Detail |
| 0.125 | Fibrinogen Adverse Event | [A genome-wide survey of the human genome identifies novel loci related to commo... | GAD | 20031577 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| Novel loci, including those related to Crohn disease, psoriasis, and inflammation, identified in a g... | DisGeNET | Detail |
| [A genome-wide survey of the human genome identifies novel loci related to common chronic inflammato... | DisGeNET | Detail |
| [A genome-wide survey of the human genome identifies novel loci related to common chronic inflammato... | DisGeNET | Detail |
| [Novel loci, including those related to Crohn disease, psoriasis, and inflammation, identified in a ... | DisGeNET | Detail |
| [A genome-wide survey of the human genome identifies novel loci related to common chronic inflammato... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs1016988 dbSNP
- Genome
- hg38
- Position
- chr5:132,408,882-132,408,882
- Variant Type
- snv
- Reference Allele
- T
- Alternative Allele
- C
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs1016988
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.3415
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 5723
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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